genome.signature: ratio-invariant structural topology hash (per-storey tree
shape + cut orientation + leaf types), the cheap stand-in for the 9gp canonical
encoding. driver gains niche_by_signature (one individual per topology, replaces
the fitness-scalar dedup) and restart_patience (soft restart: keep elites,
refill with fresh seeds); SearchResult gains n_distinct_signatures /
diversity_history / n_restarts.
Diversity criterion MET (final-pop distinct ~5/16 -> 16/16). Gate NOT met:
blank-slate programme-house mean fails 12.3(legacy)/12.7(niche)/13.0(restart)
over 3 seeds at 20000 evals; harbor staged 95/94/108. Niching is a tie within
seed noise, restarts strictly worse — falsifies the premise that the
fitness-scalar dedup causes premature convergence. Both flags default-off,
kept for reuse. Epic c4c complete.
Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
Implement a graded proximity comparator key (-n_fails, grade, fitness) behind
a default-off use_grade flag: fitness._leaf_grade / score_with_grade sum
f/FAIL_THRESHOLD over failing per-leaf quality factors; scalar fitness and fail
count stay untouched so the inner-loop 0.5^n cliff (§5.4) is unaffected (0/9
regression check: PASS). Read once per child in driver._evaluate off the
already-optimised tree; threaded through search_staged (Stage 2 only).
Harbor staged A/B (20000 evals, seeds 0/1/2): lex 95/96/106 (mean 99.0) vs
lex+grade 99/98/102 (mean 99.7) — grade wins 1/3, no plateau escape. Premise
falsified: within a fixed fail-tier 0.5^n is constant so fitness still spans
~6 orders of magnitude; grade above fitness displaces that working signal.
Verdict: reject; lexicographic (-n_fails, fitness) stands. Flag kept default-off
for reproducibility / possible reuse as a §11.5 diversity signal.
Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
programme-house budget=20000: 1.04e-02 (2 fails), 1.36× over Phase-2
oracle run and 2.60× over urb-evolve p128. Winning topology found via
rotate at eval 10357, unreachable within Phase-2 budget. 71.8 evals/s
(~140× faster than batched oracle).
harbor-house (16 rooms): 3.73e-18 (49 fails) at budget 10000 in 633s.
This programme is beyond the oracle's capability; native fitness makes
it feasible. 638 topologies explored.
Adds experiments/run_search_scaled.py (native-only search runner, no
oracle dependency). DESIGN.md records Phase 3 gate result.
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
