Search the genome in causal dependency order. Stage 1 evolves a single-storey
base over the level-0 room set (programme auto-derived to a tempdir), ranked
with a substrate-readiness bonus (reserved core × divisible capacity) so the
base is selected as a good substrate, not just a good ground floor (anti-§4.2).
Stage 2 lifts the best base into a full multi-storey design — preserving the
inherited core, instantiating each upper storey's required set by construction —
and searches the deltas with the base mutable at low probability (base_p=0.15).
New: programme.{n_storeys_required,partition_rooms_by_storey,write_stage1_programme},
graph.substrate_readiness, operators.{lift_base_to_storeys,_pick_weighted_by_storey},
base_p threading, driver.search rank_bonus_fn/seed_factory/base_p hooks +
search_staged orchestrator, experiments/run_staged_search.py, tests/test_staging.py.
Result (harbor, 20000 evals, seed 0): staged 95 fails vs single-stage 105
(-10, -9.5%), gain in crinkliness 27->18 + edge 12->8. Anti-bungalow confirmed
(Stage-2 core moves all noop — core inherited, not carved). Programme-house
regression PASS (warmstart-2f4 still reaches whole-pop 1-fail).
Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
